YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CYC1A_ARATH
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGGGVIQQI LRRKLHSQSL ATPVLSWFSS KKAHEDAGSS GVRALALLGA GVTGLLSFST  60
   61 VASADEAEHG LESPEYPWPH DGILSSYDHA SIRRGHQVYQ QVCASCHSMS LISYRDLVGV 120
  121 AYTEEEAKAM AAEIEVVDGP NDEGEMFTRP GKLSDRFPQP YANESAARFA NGGAYPPDLS 180
  181 LITKARHNGP NYVFALLTGY RDPPAGISIR EGLHYNPYFP GGAIAMPKML NDEAVEYEDG 240
  241 VPATEAQMGK DIVSFLAWAA EPEMEERKLM GFKWIFLLSL ALLQAAYYRR LKWSVLKSRK 300
  301 LVLDVVN

Type	Start	End	Confidence
Non-Cytoplasmic	1	269	0.73
Transmembrane Helix	270	291	0.65
Cytoplasmic	292	307	0.56