YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25406454, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALFQEKLSS LSSSYSSIHS LPRILVSKPR NRIAVTKSRS ICRASWQELA GVLVFSAIPF  60
   61 TAVKAIANSS IGVSLRRRLE EKKKEAVENS SRFKSKAQEA RNDSKWYGKE RPRWFGPIPY 120
  121 DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT 180
  181 FHFAEPVWWR VGYSKLQGET LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE 240
  241 ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF 300
  301 TGKGPVQNLV DHVSDPLHNN LIAMLQT

Type	Start	End	Confidence
Cytoplasmic	1	160	0.69
Transmembrane Helix	161	183	0.72
Non-Cytoplasmic	184	207	0.91
Transmembrane Helix	208	229	0.74
Cytoplasmic	230	327	0.74