YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7446863, gi\|3...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIKGLTKLL ADNAPSCMKE QKFESYFGRK IAVDASMSIY QFLVRAPSSP LLLLEELGLK  60
   61 CSLMKLVKSL VWIFLCDVLC LYVFFVYVVI YMMFNRHLQG MFNRTIRLLE AGIKPVYVFD 120
  121 GKPPELKRQE LAKRYSKRAD ATADLTGAIE AGNKEDIEKY SKRTVKVTKQ HNDDCKRLLR 180
  181 LMGVPVVEAT SEAEAQCAAL CKSGKVYGVA SEDMDSLTFG APKFLRHLMD PSSRKIPVME 240
  241 FEVAKILEEL QLTMDQFIDL CILSGCDYCD SIRGIGGQTA LKLIRQHGSI ETILENLNKE 300
  301 RYQIPEEWPY NEARKLFKEP DVITDEEQLD IKWTSPDEEG IVQFLVNENG FNIDRVTKVC 360
  361 FT

Type	Start	End	Confidence
Cytoplasmic	1	69	0.94
Transmembrane Helix	70	94	0.91
Non-Cytoplasmic	95	362	0.95