YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STAD1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMAMDRIAL FSSSSSVYHH GSSHSHGSKS SRVFTIRSDS TAVGRKLYIP PREVHLQVKY  60
   61 SMPPQKLEIF KSLEGWANDN LLAYLKPVEK SWQPTDFLPE PESEGFYDQV KELRERCKEL 120
  121 SDDYLIVLVG DMITEEALPT YQTMINTLDG VRDETGASPT PWAVWTRAWT AEENRHGDLL 180
  181 NKYLYLSGRV DMRQIEKTIQ YLIGSGMDPK TENNPYLGFI YTSFQERATF ISHGNTARLA 240
  241 KDLGDLTLGK ICGTIAADER RHEHAYTKIV EKLFEIDPDT TVVGFADMMR KKISMPAHLM 300
  301 YDGRDDNLFD HFSSVAQRLG VYTAKDYADI LQHLVERWNV EKLSDLSSEG NRAQDYLCGL 360
  361 PARIRKLEER AQGRTKEAAK NIPFSWIFGR EVRA

Type	Start	End	Confidence
Signal Peptide	1	25	0.53
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	394	0.99