YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NCS1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	136	0.94
Transmembrane Helix	137	155	0.92
Non-Cytoplasmic	156	167	0.66
Transmembrane Helix	168	194	0.75
Cytoplasmic	195	211	0.72
Transmembrane Helix	212	231	0.80
Non-Cytoplasmic	232	256	0.78
Transmembrane Helix	257	277	0.89
Cytoplasmic	278	288	0.84
Transmembrane Helix	289	307	0.92
Non-Cytoplasmic	308	326	0.80
Transmembrane Helix	327	349	0.88
Cytoplasmic	350	366	0.84
Transmembrane Helix	367	391	0.85
Non-Cytoplasmic	392	404	0.83
Transmembrane Helix	405	429	0.84
Cytoplasmic	430	445	0.81
Transmembrane Helix	446	467	0.90
Non-Cytoplasmic	468	477	0.80
Transmembrane Helix	478	500	0.92
Cytoplasmic	501	520	0.93
Transmembrane Helix	521	545	0.83
Non-Cytoplasmic	546	559	0.86
Transmembrane Helix	560	581	0.89
Cytoplasmic	582	599	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSNCLSLSL HLNLHPHKHN RHSLSSLRSR TKAKLYQHVS FTDSSHKSSY TSCVSTFDIQ  60
   61 RKSSKHYELG KHSFSPILPG DNLVLSRSGV IRPRLSAMTG SEINDHGYDE SQFDPSLTND 120
  121 DLKPTTPSQR TFSWLDMSSL WIGLVVGVPT YYLAGSLVDL GMAWWQGIAT VVTANLILLV 180
  181 PLVLTAQPGT LYGISFPVLA RSSFGIRGAH IPTLLRALVG CGWYGIETWI GGEAIFLLLP 240
  241 GHIKKSALSH TLPWLGTSPL EFSCFIVFWL AQLCIVWRGM DGIRKLEKYS APILISLTSC 300
  301 LLAWSYLKAG GFGHMLSLSS KLTSAQFWTL FFPSLTANIS FWATLALNIP DFSRFAKSQT 360
  361 DQIIGQVGLP VFMGLFTFVG VAVTSSTSII FGRVISNPIE LLGQIGGLAT TLLAIVGISL 420
  421 ATLTTNIAAN VVAPANALVN LNPKFFTFGR GAFLTAVLGI VFQPWRLLKS SESFVYTWLI 480
  481 GYSALLGPIG GIILVDYYLI KKMKLNIGDL YSLSPSGEYY FSKGYNVAAV VALVAGIIPV 540
  541 VPGFLHKISA LSKISNGFVV VYDNALFFSF IIAGFVYWII MSRLGRKQSS LSSSSHPLL