YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9294055
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDATSESER TSLDLSISSP KQAYYVESPS SVSQLDDGEK SSSSASLIQV HTPNYTILSE  60
   61 SRLSSSSRTS NGTSGMGFRW KGSSRRSNMY WPEKPYTINE DEVYDDNRGL SVGQCRAVLV 120
  121 ILGTVVVFSV FCSVLWGASH PFSPIVSVKS VDIHSFYYGE GIDRTGVATK ILSFNSSVKV 180
  181 TIDSPAPYFG IHVSSSTFKL TFSALTLATG QLKSYYQPRK SKHISIVKLT GAEVPLYGAG 240
  241 PHLAASDKKG KVPVKLEFEI RSRGNLLGKL VKSKHENHVS CSFFISSSKT SKPIEFTHKT 300
  301 CKLVTK

Type	Start	End	Confidence
Cytoplasmic	1	116	0.97
Transmembrane Helix	117	138	0.94
Non-Cytoplasmic	139	306	0.78