YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10177121, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMARPRNHRP SARKSSHSTL VFAVLIMSTF VILILLAFGI LSVPSNNAGS SKANDLTSIV  60
   61 RKTLQRSGED DSKNERWVEI ISWEPRASVY HNFLTKEECK YLIELAKPHM EKSTVVDEKT 120
  121 GKSTDSRVRT SSGTFLARGR DKTIREIEKR ISDFTFIPVE HGEGLQVLHY EIGQKYEPHY 180
  181 DYFMDEYNTR NGGQRIATVL MYLSDVEEGG ETVFPAAKGN YSAVPWWNEL SECGKGGLSV 240
  241 KPKMGDALLF WSMTPDATLD PSSLHGE

Type	Start	End	Confidence
Cytoplasmic	1	19	0.89
Transmembrane Helix	20	41	0.90
Non-Cytoplasmic	42	267	0.99