YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GLIP1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENSQLVSIT FLAYTIIISI GSINCIDNNN LVTNQSALFV FGDSVFDAGN NNYIDTLSSV  60
   61 RSNYWPYGQT TFKSPTGRVS DGRLIPDFIA EYAWLPLIPP NLQPFNGNSQ FAYGVNFASG 120
  121 GAGALVGTFS GLVINLRTQL NNFKKVEEML RSKLGDAEGK RVISRAVYLF HIGLNDYQYP 180
  181 FTTNSSLFQS ISNEKYVDYV VGNMTDVFKE VYNLGGRKFG ILNTGPYDCA PASLVIDQTK 240
  241 IRSCFQPVTE LINMHNEKLL NGLRRLNHEL SGFKYALHDY HTSLSERMND PSKYGFKEGK 300
  301 KACCGSGPLR GINTCGGRMG LSQSYELCEN VTDYLFFDPF HLTEKANRQI AELIWSGPTN 360
  361 ITGPYNLKAL FELN

Type	Start	End	Confidence
Cytoplasmic	1	6	0.59
Transmembrane Helix	7	26	0.49
Non-Cytoplasmic	27	374	0.59