YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|59958320, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILSFPHTF FNISPSLFYT ILISSLVLLI LTRRSAKSKI VKLPPGPPGW PVVGNLFQFA  60
   61 RSGKQFYEYV DDVRKKYGPI YTLRMGSRTM IIISDSALVH DVLIQRGPMF ATRPTENPTR 120
  121 TIFSSNTFTV NASAYGPVWR SLRKNMVQNM LSSIRFREFG SLRQSAMDKL VERIKSEAKD 180
  181 NDGLVWVLRN ARFAAFCILL EMCFGIEMDE ESILNMDQVM KKVLITLNPR LDDYLPILAP 240
  241 FYSKERARAL EVRCEQVDFI VKLIERRRRA IQKPGTDKTA SSFSYLDTLF DLKTEGRITT 300
  301 PSNEELVSLC SEFLNGGTDT TGTAIEWGIA QLIVNPEIQS RLYDEIKSTV GDREVEEKDV 360
  361 DKMVFLQAVV KEILRKHPPT YFTLTHSVTE PTTVAGYDVP VGINVEFYLP GINEDPKLWS 420
  421 DPKKFNPDRF ISGKEEADIT GVTGVKMMPF GIGRRICPGL AMATVHVHLM LAKMVQEFEW 480
  481 SAYPPESEID FAGKLEFTVV MKKPLRAMVK PRV

Type	Start	End	Confidence
Signal Peptide	1	36	0.39
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	513	0.73