YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	THIM_ARATH
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESKSEQNEW SSGVWAHLTA VRQQSPLVQC ITNFVSMDLV ANTLLSAGAS PAMVHSVVEI  60
   61 PDFTPHIHAL CVNVGTLTPD WLPSMKAAAE LASQLRKPWV LDPAAVSCSG FRLKACLELI 120
  121 ELKPTVIKGN GSEIIALSSA SRGQTKGADS SHESTDAIEA AKSLAMSSGA VVAVSGAVDI 180
  181 VTDGKQVIGV HNGTKMMQQI TATGCSLAGL IVAFLAIDSS RVLEATVSAM AVFGIAGELG 240
  241 EAMANGPASL RMHLIDCLYG LDETTVLKRV NVTRLG

Type	Start	End	Confidence
Cytoplasmic	1	198	0.59
Transmembrane Helix	199	217	0.68
Non-Cytoplasmic	218	276	0.48