YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TI233_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPMNHSTG HQQQQKYRQY NPYQQVNLPY RKLYELPTSP EFLFEEEATK KRLTWGENLT  60
   61 FFTGWGYCTG SVLGAFKGTI AGMRAAERGE SLKIRTNRIL NSGGLVARRG GNCLGSVGLM 120
  121 FAAMESGVTY MRDGDDGSLT TVIAGLATGV LYRAASGPRS AVVAGAVGGV AALAAVAGRR 180
  181 IVKRFVPI

Type	Start	End	Confidence
Non-Cytoplasmic	1	62	0.50
Transmembrane Helix	63	81	0.63
Cytoplasmic	82	104	0.73
Transmembrane Helix	105	124	0.76
Non-Cytoplasmic	125	159	0.63
Transmembrane Helix	160	182	0.85
Cytoplasmic	183	188	0.83