YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PHSB_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	48	0.95
Transmembrane Helix	49	69	0.84
Non-Cytoplasmic	70	74	0.85
Transmembrane Helix	75	94	0.92
Cytoplasmic	95	109	0.76
Transmembrane Helix	110	127	0.89
Non-Cytoplasmic	128	157	0.77
Transmembrane Helix	158	179	0.85
Cytoplasmic	180	185	0.70
Transmembrane Helix	186	210	0.89
Non-Cytoplasmic	211	227	0.71
Transmembrane Helix	228	242	0.50
Cytoplasmic	243	261	0.56
Transmembrane Helix	262	285	0.90
Non-Cytoplasmic	286	312	0.60
Transmembrane Helix	313	334	0.62
Cytoplasmic	335	354	0.87
Transmembrane Helix	355	375	0.92
Non-Cytoplasmic	376	380	0.77
Transmembrane Helix	381	400	0.91
Cytoplasmic	401	414	0.85
Transmembrane Helix	415	439	0.86
Non-Cytoplasmic	440	443	0.77
Transmembrane Helix	444	463	0.94
Cytoplasmic	464	495	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKRRIITVN PSASIEMSQY ENNEVPYSSV GADEVPSSPP KATDKIRKVS MLPLVFLIFY  60
   61 EVSGGPFGVE DSVNAAGPLL ALLGFVIFPF IWSIPEALIT AEMGTMYPEN GGYVVWVSSA 120
  121 LGPFWGFQQG WMKWLSGVID NALYPVLFLD YLKSGVPALG SGLPRVASIL VLTILLTYLN 180
  181 YRGLTIVGWV AVLMGVFSIL PFAVMGLISI PQLEPSRWLV MDLGNVNWNL YLNTLFWNLN 240
  241 YWDSISTLAG EVENPNHTLP KALFYGVILV ACSYIFPLLA GIGAIPLERE KWTDGYFSDV 300
  301 AKALGGAWLR WWVQAAAATS NMGMFIAEMS SDSFQLLGMA ERGMLPEFFA KRSRYGTPLL 360
  361 GILFSASGVV LLSWLSFQEI VAAENLLYCV GMILEFIAFV RMRMKHPAAS RPYKIPIGTT 420
  421 GSILMCIPPT ILICAVVALS SLKVAAVSIV MMIIGFLIHP LLNHMDRKRW VKFSISSDLP 480
  481 DLQQQTREYE ETLIR