YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3176684, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.97
Transmembrane Helix	41	61	0.94
Non-Cytoplasmic	62	79	0.88
Transmembrane Helix	80	100	0.96
Cytoplasmic	101	108	0.85
Transmembrane Helix	109	130	0.91
Non-Cytoplasmic	131	142	0.77
Transmembrane Helix	143	165	0.83
Cytoplasmic	166	172	0.88
Transmembrane Helix	173	195	0.89
Non-Cytoplasmic	196	211	0.88
Transmembrane Helix	212	231	0.96
Cytoplasmic	232	277	0.94
Transmembrane Helix	278	297	0.92
Non-Cytoplasmic	298	308	0.86
Transmembrane Helix	309	332	0.79
Cytoplasmic	333	342	0.74
Transmembrane Helix	343	363	0.85
Non-Cytoplasmic	364	369	0.78
Transmembrane Helix	370	392	0.92
Cytoplasmic	393	403	0.87
Transmembrane Helix	404	426	0.94
Non-Cytoplasmic	427	428	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTDKSAGI VTDSEAGPET SLLLNPHEGS TKKAPSDSYH FAYIIYFTLG VGFLLPWNAF  60
   61 ITAVDYFSYL YPSTAVDRIF AVIYMLVALV CLFVIVVFYA HKSLASFRIN LGLLLFVIAL 120
  121 LVVPVLDLVY VKGQVGLYAG FDVTSAAVAL SGLGDALMQG GLIGVAGEMP ERYMQAVVAG 180
  181 TAGSGVLVSL LRILTKAVYP QDPDGLRKSA NLYFAVGIVV MVICAVFYNV AHKLPVIKFH 240
  241 EERKNEELIR EKSEEKGSLT GLAWRTTLWD IVTKVKSHGF GIVLLYMVTL SIFPGYITED 300
  301 VHSELLTDWY PILLIAAYNV FDLVGKCLTA VFMLEDEKIA VGGSIARLLF YPLFWGCLHG 360
  361 PMFLRTEIPV TILTCLLGLT NGYLTSVLMI LAPKSVPLRH SETAGIVTVM FLVVGLASGS 420
  421 VIAWFWVI