YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4191791, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGLNNAVSL DIEEICNGGK EHHVKTCHGS VSVVVYGDQE KPALITYPDV ALNYMSCFQG  60
   61 LFLCPEAVSL LLHNFCIYHI SPPGHEFGAA PVCSNDPSPS VEDLADQILE VLNFFSLEAV 120
  121 MCMGITAGAY ILSLFAIKHK ERVLGLILIS PLCKAPSWSE WFYYKVVSNL LYYYGMSGLL 180
  181 KDIFLQRYFS KEARGSSEVP ERDVVHECRR LLGERHGSSL MRFLEAVNRR HDLTDGLKSL 240
  241 KCRTLIFVGD QSPFHSETLH MVTALDRKYS ALVEVQACGS MVTEEQPHAM LIPMEFFFMG 300
  301 FGLYRPGRVS DSPRSPLSPS CISPELLSPE SLGLKLKPIK TRVPTKC

Type	Start	End	Confidence
Cytoplasmic	1	59	0.63
Transmembrane Helix	60	77	0.48
Non-Cytoplasmic	78	113	0.83
Transmembrane Helix	114	137	0.70
Cytoplasmic	138	347	0.56