YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CHX25_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	62	0.82
Transmembrane Helix	63	84	0.91
Cytoplasmic	85	93	0.71
Transmembrane Helix	94	110	0.85
Non-Cytoplasmic	111	121	0.78
Transmembrane Helix	122	142	0.93
Cytoplasmic	143	160	0.91
Transmembrane Helix	161	181	0.95
Non-Cytoplasmic	182	193	0.85
Transmembrane Helix	194	214	0.93
Cytoplasmic	215	226	0.86
Transmembrane Helix	227	249	0.87
Non-Cytoplasmic	250	258	0.81
Transmembrane Helix	259	279	0.96
Cytoplasmic	280	299	0.94
Transmembrane Helix	300	324	0.87
Non-Cytoplasmic	325	349	0.69
Transmembrane Helix	350	364	0.46
Cytoplasmic	365	383	0.49
Transmembrane Helix	384	406	0.87
Non-Cytoplasmic	407	413	0.51
Transmembrane Helix	414	435	0.47
Cytoplasmic	436	443	0.42
Transmembrane Helix	444	467	0.86
Non-Cytoplasmic	468	857	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRSFPSDGW SALPTRFGFW PENPTTAGVV SSRVFSARLP EVCRQVHDKQ PFGMFKGENG  60
   61 MNYTFSTFLI EAILIIFFIK IVYVLLRPLR QPRIVCEIIG GMMIGPSMLG RNRNFNYYLF 120
  121 PPIANYICAN IGLMGFFYFF FLTAAKTDVA EIFKAPRKHK YIAAVSVLVP IACVGSTGAA 180
  181 LKHKMDIRLQ KPSSIGGVTF ALGFTSFPVI YTVLRDMNLL NSEIGKFAMS VTLLGDMVGV 240
  241 YVLVLFEAMA QADGGGGAYS VIWFLISAAI MAACLLLVVK RSFEWIVAKT PEGGLVNQNY 300
  301 IVNILMGVLV SCFLTDMFGM AIAVGPIWLG LVVPHGPPLG STLAIRSETF VNEFLMPFSF 360
  361 ALVGQKTNVN LISKETWPKQ ISPLIYMSIV GFVTKFVSST GAALFFKVPT RDSLTLGLMM 420
  421 NLRGQIDILL YLHWIDKQMV GLPGYSVMVL YAIVVTGVTA PLISFLYDPT RPYRSSKRRT 480
  481 IQHTPQNTET GLVLAVTDHD TFSGLITFLD FAYPTKTSPF SVFAIQLVEL EGRAQPLFIA 540
  541 HDKKREEEYE EEEEPAERMG SRRVDQVQSA FKLYQEKRSE CVTMHAYTAH ASKHNMYQNI 600
  601 CELALTKKTA FILLPYQKER LQDAALTELR DSGMLSVNAD VLAHTPCSVC IYYEKGRLKN 660
  661 AMVRSSMDPQ HTTNSSHMRQ EMYRFVVLFL GGADNREALH LADRMTENPF INLTVIRFLA 720
  721 HNHEGEDERE KKLDDGVVTW FWVKNESNAR VSYKEVVVKN GAETLAAIQA MNVNDYDLWI 780
  781 TGRREGINPK ILEGLSTWSE DHQLGVIGDT VAGSVFASEG SVLVVQQQVR NQMGGDGFLN 840
  841 GKFDYKKLVS PWSHSHN