YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX36_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.95
Transmembrane Helix	53	75	0.82
Non-Cytoplasmic	76	95	0.75
Transmembrane Helix	96	117	0.82
Cytoplasmic	118	129	0.87
Transmembrane Helix	130	153	0.83
Non-Cytoplasmic	154	165	0.78
Transmembrane Helix	166	188	0.89
Cytoplasmic	189	198	0.86
Transmembrane Helix	199	220	0.88
Non-Cytoplasmic	221	228	0.71
Transmembrane Helix	229	251	0.89
Cytoplasmic	252	271	0.91
Transmembrane Helix	272	293	0.90
Non-Cytoplasmic	294	312	0.80
Transmembrane Helix	313	334	0.90
Cytoplasmic	335	350	0.89
Transmembrane Helix	351	373	0.90
Non-Cytoplasmic	374	395	0.82
Transmembrane Helix	396	418	0.79
Cytoplasmic	419	425	0.62
Transmembrane Helix	426	447	0.87
Non-Cytoplasmic	448	455	0.75
Transmembrane Helix	456	476	0.93
Cytoplasmic	477	503	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSEATTAVN NLQQPLLEST KSEADFRMES VLTDTHLSYF RRIYLASLIE MKYLFHLAAP  60
   61 AIFVYVINNG MSMLTRIFAG RLGSMQLAAA SLGNSGFNMF TLGLMLGMGS AVETLCGQAH 120
  121 GAHRYDMLGV YLQRSTIVLV ITGLPMTLLF IFSKPLLISL GEPADVASVA SVFVYGMIPM 180
  181 IFAYAVNFPI QKFLQSQSIV TPSAYISAAT LVIHLILSWL SVFKFGWGLL GLSVVHSLSW 240
  241 WIIVLAQIIY IKISPRCRRT WDGFSWKAFD GLWDFFQLSA ASAVMLCLES WYSQILVLLA 300
  301 GLLKDPELAL DSLAICMSIS AMSFMVSVGF NAAASVRVSN ELGAGNPRSA AFSTAVTTGV 360
  361 SFLLSLFEAI VILSWRHVIS YIFTDSPAVA EAVAELSPFL AITIVLNGVQ PVLSGVAVGC 420
  421 GWQAYVAYVN IGCYYIVGIP IGYVLGFTYD MGARGIWTGM IGGTLMQTII LVIVTFRTDW 480
  481 DKEVEKASRR LDQWEDTSPL LKQ