YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21360399, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKIKGEYS SRSFVSRKWT ILLCLGSFCV GMFFTNRMWN IPESKGMSHP SVTEAERLKL  60
   61 VSEGCNPKAK EVKRDPQALF GEVANTHIAL QTLDKTISSL EMELAAARSV QESLQNGAPL 120
  121 SDDMGKKQPQ EQRRFLMVVG INTAFSSRKR RDSIRATWMP QGEKRKRLEE EKGIIIRFVI 180
  181 GHSATTGGIL DRAIEAEDRK HGDFLRLDHV EGYLELSGKT KTYFSTAFSM WDADFYVKVD 240
  241 DDVHVNIATL GETLVRHRKK PRVYIGCMKS GPVLSQKGVR YHEPEYWKFG ENGNKYFRHA 300
  301 TGQLYAISRD LASYISINQH VLHKYANEDV SLGAWFIGID VKHIDDRRLC CGTPPDCEWK 360
  361 AQAGNICVAS FDWSCSGICR SADRIKEVHR RCGEGEKALW SATF

Type	Start	End	Confidence
Cytoplasmic	1	18	0.87
Transmembrane Helix	19	39	0.85
Non-Cytoplasmic	40	404	0.99