YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATL9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILDTKSSR WIPHNLLFLL LLLLLQSVPY GFGQTQTTPP GTTKTKPNDP VVVVITVLFL  60
   61 VIFFMVFGSI FCRRSNAQFS RSSIFRSTDA DAESQVVRIR RLTARGLDAE AIETFPTFLY 120
  121 SEVKAVRIGK GGVECAVCLC EFEDDETLRL MPPCCHVFHA DCVDVWLSEH STCPLCRADL 180
  181 VLNQQGDDDD STESYSGTDP GTISSSTDPE RGMVLESSDA HLLDAVTWSN SNITPRSKST 240
  241 GLSSWQITGI LFPRSHSTGH SLIQPAGNLD RFTLRLPDDV RRQLMKTSRT MGHVALLPQA 300
  301 RSSRSGYRSG SVGSERSAFP YGRKSNNNNR RLHSLSFSFS FRSGSVRSTF SGDAPKNLPT 360
  361 SIEAGERSFE RLRPDERV

Type	Start	End	Confidence
Cytoplasmic	1	10	0.73
Transmembrane Helix	11	33	0.67
Non-Cytoplasmic	34	50	0.91
Transmembrane Helix	51	72	0.86
Cytoplasmic	73	378	0.87