YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACBP1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADWYQLAQS IIFGLIFAYL LAKLISILLA FKDENLSLTR NHTTQSEYEN LRKVETLTGI  60
   61 SGETDSLIAE QGSLRGDEDE SDDDDWEGVE STELDEAFSA ATAFVAAAAS DRLSQKVSNE 120
  121 LQLQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIDLVTQLYP 180
  181 AWVEGGSKRR NRSGEAAGPM GPVFSSLVYE EESDNELKID AIHAFAREGE VENLLKCIEN 240
  241 GIPVNARDSE GRTPLHWAID RGHLNVAEAL VDKNADVNAK DNEGQTSLHY AVVCEREALA 300
  301 EFLVKQKADT TIKDEDGNSP LDLCESEWSW MREKKDSN

Type	Start	End	Confidence
Cytoplasmic	1	9	0.65
Transmembrane Helix	10	31	0.86
Non-Cytoplasmic	32	338	0.78