YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RTNLA_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEEHKHDES VIAPEPAVEV VERESLMDKI SEKIHHGGDS SSSSSSSDDE DEKKKTKKPS  60
   61 SPSSSMKSKV YRLFGREQPV HKVLGGGKPA DIFMWKNKKM SGGVLGGATA AWVVFELMEY 120
  121 HLLTLLCHVM IVVLAVLFLW SNATMFINKS PPKIPEVHIP EEPILQLASG LRIEINRGFS 180
  181 SLREIASGRD LKKFLIAIAG LWVLSILGGC FNFLTLAYIA LVLLFTVPLA YDKYEDKVDP 240
  241 LGEKAMIELK KQYAVLDEKV LSKIPLGPLK NKKKD

Type	Start	End	Confidence
Cytoplasmic	1	99	0.96
Transmembrane Helix	100	115	0.91
Non-Cytoplasmic	116	121	0.66
Transmembrane Helix	122	144	0.87
Cytoplasmic	145	197	0.92
Transmembrane Helix	198	221	0.90
Non-Cytoplasmic	222	275	0.92