YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PNSL1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSSLSIRC GGFSPTISHK TEILCPNPSL KACCLLSSGG KADSSESTYQ KGSGNNWKRR  60
   61 QALVGVGTLV ATSIPATLLL AEEIPKSYSP FVDREDGYSY YYPSDWREFD FRAHDSAFKD 120
  121 RYLQLQNVRV RFIPTEKNDI HEVGPMEEVV YDLVKHKFAA PNQVATIYDM KERVEDGKNY 180
  181 YTFEYGLRTP IYATTSFATV AVGNNRYYTL IVGANERRWR KVKKQLQVVA DSLKILQI

Type	Start	End	Confidence
Cytoplasmic	1	61	0.57
Transmembrane Helix	62	81	0.57
Non-Cytoplasmic	82	238	0.97