YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ADS1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSASEKEE NNKKMAADKA EMGRKKRAMW ERKWKRLDIV KAFASLFVHF LCLLAPFNFT  60
   61 WPALRVALIV YTVGGLGITV SYHRNLAHRS FKVPKWLEYF FAYCGLLAIQ GDPIDWVSTH 120
  121 RYHHQFTDSD RDPHSPNEGF WFSHLLWLFD TGYLVEKCGR RTNVEDLKRQ WYYKFLQRTV 180
  181 LYHILTFGFL LYYFGGLSFL TWGMGIGVAM EHHVTCLINS LCHVWGSRTW KTNDTSRNVW 240
  241 WLSVFSFGES WHNNHHAFES SARQGLEWWQ IDISWYIVRF LEIIGLATDV KLPSESQRRR 300
  301 MAMVR

Type	Start	End	Confidence
Cytoplasmic	1	36	0.99
Transmembrane Helix	37	57	0.93
Non-Cytoplasmic	58	63	0.72
Transmembrane Helix	64	86	0.86
Cytoplasmic	87	178	0.71
Transmembrane Helix	179	202	0.86
Non-Cytoplasmic	203	272	0.55
Transmembrane Helix	273	292	0.67
Cytoplasmic	293	305	0.89