YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TET11_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRVSNFMVG LANTLVMLVG ASAIGYSIYM FVHQGVTDCE SAIRIPLLTT GLILFLVSLL  60
   61 GVIGSCFKEN LAMVSYLIIL FGGIVALMIF SIFLFFVTNK GAGRVVSGRG YKEYRTVDFS 120
  121 TWLNGFVGGK RWVGIRSCLA EANVCDDLSD GRVSQIADAF YHKNLSPIQS GCCKPPSDCN 180
  181 FEFRNATFWI PPSKNETAVA ENGDCGTWSN VQTELCFNCN ACKAGVLANI REKWRNLLVF 240
  241 NICLLILLIT VYSCGCCARR NNRTARKSDS V

Type	Start	End	Confidence
Cytoplasmic	1	8	0.70
Transmembrane Helix	9	30	0.92
Non-Cytoplasmic	31	42	0.67
Transmembrane Helix	43	67	0.86
Cytoplasmic	68	73	0.69
Transmembrane Helix	74	97	0.91
Non-Cytoplasmic	98	236	0.76
Transmembrane Helix	237	258	0.86
Cytoplasmic	259	271	0.72