YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DIT1_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.47
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.46
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	89	0.57
Transmembrane Helix	90	110	0.92
Cytoplasmic	111	118	0.87
Transmembrane Helix	119	142	0.86
Non-Cytoplasmic	143	157	0.76
Transmembrane Helix	158	180	0.84
Cytoplasmic	181	195	0.77
Transmembrane Helix	196	219	0.82
Non-Cytoplasmic	220	228	0.66
Transmembrane Helix	229	249	0.80
Cytoplasmic	250	258	0.79
Transmembrane Helix	259	281	0.90
Non-Cytoplasmic	282	304	0.85
Transmembrane Helix	305	325	0.94
Cytoplasmic	326	351	0.85
Transmembrane Helix	352	371	0.89
Non-Cytoplasmic	372	376	0.76
Transmembrane Helix	377	396	0.91
Cytoplasmic	397	403	0.74
Transmembrane Helix	404	425	0.83
Non-Cytoplasmic	426	437	0.71
Transmembrane Helix	438	463	0.73
Cytoplasmic	464	466	0.48
Transmembrane Helix	467	487	0.77
Non-Cytoplasmic	488	489	0.32
Transmembrane Helix	490	519	0.67
Cytoplasmic	520	527	0.46
Transmembrane Helix	528	551	0.88
Non-Cytoplasmic	552	557	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLALSGSC SLAFPLKSRS LSLPRPPSSS LNLTKPLRSL DSRFSLLKSP LPVSLRRRSS  60
   61 TLVKASSTVA SASSSPTPPL VPAPVPWQGA AIKPLLASIA TGLILWFVPV PEGVTRNAWQ 120
  121 LLAIFLATIV GIITQPLPLG AVALMGLGAS VLTKTLTFAA AFSAFGDPIP WLIALAFFFA 180
  181 RGFIKTGLGN RVAYQFVRLF GSSSLGLGYS LVFSEALLAP AIPSVSARAG GIFLPLVKSL 240
  241 CVACGSNVGD GTEHRLGSWL MLTCFQTSVI SSSMFLTAMA ANPLSANLAF NTIKQTIGWT 300
  301 DWAKAAIVPG LVSLIVVPFL LYLIYPPTVK SSPDAPKLAQ EKLDKMGPMS KNELIMAATL 360
  361 FLTVGLWIFG AKLGVDAVTA AILGLSVLLV TGVVTWKECL AESVAWDTLT WFAALIAMAG 420
  421 YLNKYGLIEW FSQTVVKFVG GLGLSWQLSF GILVLLYFYT HYFFASGAAH IGAMFTAFLS 480
  481 VSTALGTPPY FAALVLAFLS NLMGGLTHYG IGSAPIFYGA NYVPLAKWWG YGFLISIVNI 540
  541 LIWLGVGGAW WKFIGLW