YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8778995, gi\|2...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.82
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALTFFFLLS NLFFSGVMSR SFTFSNKCDY TVWPGILSNA GVSPLPTTGF VLLKGETRTI  60
   61 NAPSSWGGRF WGRTLCSTDS DGKFSCATGD CGSGKIECSG AGAAPPATLA EFTLDGSGGL 120
  121 DFYDVSLVDG YNVQMLVVPQ GGSGQNCSST GCVVDLNGSC PSELRVNSVD GKEAVAMACK 180
  181 SACEAFRQPE YCCSGAFGSP DTCKPSTYSR IFKSACPRAY SYAYDDKSST FTCAKSPNYV 240
  241 ITFCPSPNTS LKSAEEHSTE TMTTTSPSSG STTSSQMVYE GALDESSGSP STYHGVSRAI 300
  301 TVVLLSLAFC RMWWFF

Type	Start	End	Confidence
Signal Peptide	1	19	0.97
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	294	0.98
Transmembrane Helix	295	315	0.80
Cytoplasmic	316	316	0.84