YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PME15_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIKPVLTTL IALLSIILAL YTIQLPSSRS LSSIATTIGA LAKYSTFFGH KHHHHHHHHH  60
   61 HHHHYHHHEP IKCCEKWTSR LRHQYKTSLV LTVDLHGCGN FSNVQSAIDV VPDLSSSKTL 120
  121 IIVNSGSYRE KVTVNENKTN LVIQGRGYQN TSIEWNDTAK SAGNTADSFS FVVFAANFTA 180
  181 YNISFKNNAP EPDPGEADAQ AVALRIEGDQ AAFYGCGFYG AQDTLLDDKG RHFFKECFIQ 240
  241 GSIDFIFGNG RSLYQDCTIN SIAKGNTSGV TGSITAQGRQ SEDEQSGFSF VNCKIDGSGE 300
  301 ILLGRAWGAY ATVVFSNTYM SGIITPEGWN NWGDSTKEKT VTFGEHKCYG PGADYKERVL 360
  361 FGKQLTDSEA SSFIDVSFID GDEWLRHTNI VSEHTSKDIG DDLIGFY

Type	Start	End	Confidence
Signal Peptide	1	30	0.83
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	407	0.99