YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DNJ36_ARATH
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLFRVWSGM DFLAWRGMAY TLLLLNFVFA CQLLLLQPLV SALDGQSVDA AELFERASQS  60
   61 IKVKRYSDAL DDLNAAIEAD PALSEAYFKR ASVLRHFCRY EDSENSYQKY LEFKSGDSNA 120
  121 EKELSQLHQA KSALETASTL YESKDIAKAL EFVDKVVLVF SPACSKAKLL KVKLLMVSKD 180
  181 YSGAISETGY ILKEDENNLE ALLLRGRAYY YLADHDIAQR HYQKGLRLDP EHSELKKAYF 240
  241 GLKKLLKKTK SAEDNANKGK LRVSAEEYKE AIALDPEHTA NNVHLYLGLC KVSVRLGRGK 300
  301 DGLNSCNEAL NIDAELIEAL HQRGEAKLLL EDWEGAVEDL KQAAQNSQDM EIHESLGKAE 360
  361 KALKMSKRKD WYKILGISRT ASISEIKKAY KKLALQWHPD KNVGNREEAE NKFREIAAAY 420
  421 EILGDDDKRA RFDRGEDLED MGGGGGGGYN PFHGGGGGGQ QYTFHFEGGF PGGGGGFGGF 480
  481 GF

Type	Start	End	Confidence
Cytoplasmic	1	11	0.81
Transmembrane Helix	12	36	0.70
Non-Cytoplasmic	37	482	0.98