YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15230132, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.33
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKLWRWYQR CLTVHPVKTQ VISSGFLWGF GDVTAQYITH STAKRRLLRL TETNKDADAD  60
   61 AEIKVKWKQD AEFKVNWKRV AITSMFGFGF VGPVGHFWYE GLDKFIKLKL RYVPKSTRFV 120
  121 AAKVAMDGLI FGPVDLLVFF TYMGFATGKN TAEVKEGLKR DFLPALALEG GAWPLLQIAN 180
  181 FRYVPVQYQL LYVNIFCLVD SAFLSWVEQQ KDAAWKQWFT SSFQPLKERG GQGGV

Type	Start	End	Confidence
Cytoplasmic	1	76	0.54
Transmembrane Helix	77	99	0.79
Non-Cytoplasmic	100	118	0.55
Transmembrane Helix	119	146	0.65
Cytoplasmic	147	161	0.43
Transmembrane Helix	162	176	0.33
Non-Cytoplasmic	177	187	0.60
Transmembrane Helix	188	207	0.56
Cytoplasmic	208	235	0.75