YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10177081, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.65
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRGSLRKLI GGGGEMASDS DRDVFSIFGP FHLTSIDWTN SYHRTSVASS LVNGVYTMER  60
   61 DKQEKRVGSE SRAMPWWDFF NFSLVETLID DYDSSIYGAV FEYKLSNLCQ NTSHAKAPPR 120
  121 YVIAFRGTIL ESDTWMTDVK HNLKFSFNTL HEGGRSLQAI RAIRSMVDKH SEAAIWLAGH 180
  181 SLGAALVLLA GKTMTSFGFL LESYIFNPPI SCIPLEQLPG GKKIKGVFQF TKTVVKATVA 240
  241 MVLTDLQVQE DDPKTASWIP YLYVNPADPI CAGYIDYFRH KTFMSEIGAS HIERIGAGKS 300
  301 VRSLLMGKSS SSDLSTEPLH LLPSADMIVN KNKPTKVMTA HGLHQWWERD SAMRENWESC 360
  361 CIRPYPDGKL EQLTIQ

Type	Start	End	Confidence
Cytoplasmic	1	172	0.61
Transmembrane Helix	173	191	0.59
Non-Cytoplasmic	192	376	0.93