YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15222822, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.54
Transmembrane Helix	18	36	0.80
Cytoplasmic	37	56	0.58
Transmembrane Helix	57	76	0.67
Non-Cytoplasmic	77	93	0.66
Transmembrane Helix	94	120	0.78
Cytoplasmic	121	134	0.60
Transmembrane Helix	135	154	0.91
Non-Cytoplasmic	155	174	0.63
Transmembrane Helix	175	197	0.83
Cytoplasmic	198	218	0.63
Transmembrane Helix	219	238	0.88
Non-Cytoplasmic	239	244	0.52
Transmembrane Helix	245	265	0.85
Cytoplasmic	266	284	0.59
Transmembrane Helix	285	308	0.86
Non-Cytoplasmic	309	320	0.51
Transmembrane Helix	321	344	0.70
Cytoplasmic	345	356	0.40
Transmembrane Helix	357	383	0.85
Non-Cytoplasmic	384	391	0.41
Transmembrane Helix	392	416	0.84
Cytoplasmic	417	420	0.35

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLFGIGYV LIIFEESLSF SKSGIALLMA VSLWVVRSIE TSVEIVTLEL QHATSEVSQI  60
   61 VFYMLGAMTI VEIIDAHQGF KLVTDCITSR KPKILLWVIG FATFFLSSVL DNLTSTIVMV 120
  121 SLLRRLIPPS EYRKLLGAVV VIAANAGGAW TPIGDVTTTM LWIHGHISTF STIKNLFLPS 180
  181 AISLVVPLAL MSLTSEVHGM GLNTPPTPLL AYDRSAPRGK LVFGVGFGAL LFVPLFKSLT 240
  241 GLPPYMGILL GLGVIWILTD VIHYGDLERQ HLKLPHALSR IDSQGALFFL GILLSMSSLD 300
  301 AAGILKVIAN YLDAHIANVE LIASIIGVVS AIIDNVPLVA ATMGMYDLST FPQDSEFWQL 360
  361 ISFCAGTGGS MLITGSAAGV IFMSMEKVNF FWYFRKVSGF AFAGFTAGIM TYLAVHNFPL 420
  421