YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR50_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	28	0.69
Non-Cytoplasmic	29	49	0.69
Transmembrane Helix	50	72	0.78
Cytoplasmic	73	78	0.67
Transmembrane Helix	79	102	0.89
Non-Cytoplasmic	103	110	0.66
Transmembrane Helix	111	131	0.77
Cytoplasmic	132	169	0.90
Transmembrane Helix	170	191	0.92
Non-Cytoplasmic	192	200	0.76
Transmembrane Helix	201	224	0.91
Cytoplasmic	225	306	0.94
Transmembrane Helix	307	328	0.88
Non-Cytoplasmic	329	350	0.86
Transmembrane Helix	351	372	0.85
Cytoplasmic	373	391	0.82
Transmembrane Helix	392	409	0.96
Non-Cytoplasmic	410	433	0.78
Transmembrane Helix	434	452	0.90
Cytoplasmic	453	468	0.71
Transmembrane Helix	469	490	0.93
Non-Cytoplasmic	491	515	0.82
Transmembrane Helix	516	535	0.93
Cytoplasmic	536	552	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGEKRRGL SKSCALLIVI AGIERYAFKG VASNLVTYLT DVVKMSNSRA ATTVNTWSGF  60
   61 TFMLPLFSAP FADSYWDRFF TILASSSLYF VGLVGLTFTA FAGSRSTTKT ISLYFLYTSL 120
  121 SLVALGLGVL NPSLQAFGAD QLDYDLDHDN DHEPSSENKE VKSNRKTQFF QWWYFGVCAG 180
  181 SLLGVTVMAY IQDTFGWVIG FAIPTASMLL LIFLFLCGCG VYVYADPDLK AKPFQRILEI 240
  241 IKERVCGRNK ITLVNDHDLN AMELELQDQK PLCNCSNTEA NTTTKSLPDD HKSCKTGFSG 300
  301 LETVKLLLRL LPIWTMLLMF AVIFQQPATF FTKQGMTMKR NIGPNFKIPP ATLQSTITLS 360
  361 IILLMPFYDK ILIPIAKKLT KNEKGISVKE RMGIGMFLSI IAIVIAALVE RKRLKISKMM 420
  421 KTTPNLDPVS ILWLLPQYIL LGISDIFTVV GMQEFFYSEV PVSMRTMGFA LYTSVFGVGS 480
  481 FVSAALISII ETYTSSRGGK HNWFADDMSE ARLDNYYWLL AFTSAISFLM YIVICKHFKS 540
  541 RSDDDDQCDT NC