YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15225156, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.61
Transmembrane Helix	6	27	0.72
Cytoplasmic	28	34	0.71
Transmembrane Helix	35	55	0.95
Non-Cytoplasmic	56	100	0.77
Transmembrane Helix	101	123	0.89
Cytoplasmic	124	132	0.84
Transmembrane Helix	133	156	0.85
Non-Cytoplasmic	157	174	0.83
Transmembrane Helix	175	203	0.85
Cytoplasmic	204	221	0.83
Transmembrane Helix	222	241	0.92
Non-Cytoplasmic	242	249	0.76
Transmembrane Helix	250	274	0.82
Cytoplasmic	275	281	0.78
Transmembrane Helix	282	303	0.79
Non-Cytoplasmic	304	311	0.82
Transmembrane Helix	312	336	0.86
Cytoplasmic	337	358	0.83
Transmembrane Helix	359	378	0.48
Non-Cytoplasmic	379	735	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLETFANLA LVYNVFLLGL GLDLRMIKIK DIKPVIIAIV GLLAALLAGA GLYYLPSNGE  60
   61 ADKILAGCMY WSIAFGCTNF PDLARILADL KLLRTDMGHT AMCAAVVTDL CTWILFIFGM 120
  121 AIFSKSGVRN EMLPYSLAST IAFVLLCYFV IQPGVAWIFN NTVEGGQVGD THVWYTLAGV 180
  181 IICSLITEVC GVHSITGAFL FGLSIPHDHI IRKMIEEKLH DFLSGMLMPL FYIICGLRAD 240
  241 IGYMNRTVSV GMMAVVTSAS VMVKILSTMF CSIFLRIPLR DGLAIGALMN TKGTMALVIL 300
  301 NAGRDTKALD VIMYTHLTLA FLVMSMVVQP LLAIAYKPKK KLIFYKNRTI QKHKGESELC 360
  361 VLTCVHVLPN VSGITNLLQL SNPTKKSPLN VFAIHLVELT GRTTASLLIM NDEAKPKANF 420
  421 ADRVRAESDQ IAEMFTALEV NNDGVMVQTI TAVSPYATMD EDICLLAEDK QACFILLPYH 480
  481 KNMTSDGRLN EGNAVHAEIN QNVMSHAPCS VGILVDRGMT TVRFESFMFQ GETTKKEIAM 540
  541 LFLGGRDDRE ALAYAWRMVG QEMVQLTVVR FVPSQEALVS AGEAADEYEK DKHVDEESIY 600
  601 EFNFKTMNDP SVTYVEKVVK NGQETITAIL ELEDNNSYDL YIVGRGYQVE TPVTSGLTDW 660
  661 NSTPDLGIIG DTLISSNFTM QASVLVVQQY SSANRQTAEN NNQEPVQGKA KTDHEATPFM 720
  721 EDEDDEVEHQ YSMRR