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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|11994399
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKISLIAP ILLLFSFFFA VESKCRTSCP LALASYYLEN GTTLSVINQN LNSSIAPYDQ  60
   61 INFDPILRYN SNIKDKDRIQ MGSRVLVPFP CECQPGDFLG HNFSYSVRQE DTYERVAISN 120
  121 YANLTTMESL QARNPFPATN IPLSATLNVL VNCSCGDESV SKDFGLFVTY PLRPEDSLSS 180
  181 IARSSGVSAD ILQRYNPGVN FNSGNGIVYV PGRDGVGAGV IAGIVIGVIV ALLLILFIVY 240
  241 YAYRKNKSKG DSFSSSIPLS TKADHASSTS LQSGGLGGAG VSPGIAAISV DKSVEFSLEE 300
  301 LAKATDNFNL SFKIGQGGFG AVYYAELRGE KAAIKKMDME ASKQFLAELK VLTRVHHVNL 360
  361 VRLIGYCVEG SLFLVYEYVE NGNLGQHLHG SGREPLPWTK RVQIALDSAR GLEYIHEHTV 420
  421 PVYVHRDIKS ANILIDQKFR AKVADFGLTK LTEVGGSATR GAMGTFGYMA PETVYGEVSA 480
  481 KVDVYAFGVV LYELISAKGA VVKMTEAVGE FRGLVGVFEE SFKETDKEEA LRKIIDPRLG 540
  541 DSYPFDSVYK MAELGKACTQ ENAQLRPSMR YIVVALSTLF SSTGNWDVGN FQNEDLVSLM 600
  601 SGR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle