YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15218824, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKLYRKLVS FRDPFARVKR HVSSHSGFRA FSDRKWLFPF LASLIMSITL LILLISGQFD  60
   61 NFFGEEDQLP VDVVSESNDY FVESDFKQSM NSTADVNPEP PRLAYLISGT KGDSHRMMRT 120
  121 LQAVYHPRNQ YVLHLDLEAP PRERMELAMS VKTDPTFREM ENVRVMAQSN LVTYKGPTMI 180
  181 ACTLQAVSIL LRESLHWDWF LNLSASDYPL VTQDDLLYVF SNLSRNVNFI ENMQLTGWKL 240
  241 NQRAKSIIVD PALYLSKKSD IAWTTQRRSL PNSFRLFTGS AWIMLTRSFL EYCIWGWDNF 300
  301 PRTILMYYTN FVSSPEGYFH TVICNSKEFI NTAIGHDLHY IAWDSPPKQH PRSLSLKDFD 360
  361 NMVKSKAPFA RKFHKNDPAL DKIDKELLGR THRFAPGGWC VGSSANGNDQ CSVQGDDSVL 420
  421 KPGPGSERLQ ELVQTLSSEE FRRKQCS

Type	Start	End	Confidence
Cytoplasmic	1	35	0.86
Transmembrane Helix	36	57	0.81
Non-Cytoplasmic	58	447	0.97