YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OCT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.80
Transmembrane Helix	27	48	0.57
Non-Cytoplasmic	49	117	0.77
Transmembrane Helix	118	135	0.84
Cytoplasmic	136	143	0.79
Transmembrane Helix	144	167	0.87
Non-Cytoplasmic	168	175	0.63
Transmembrane Helix	176	194	0.89
Cytoplasmic	195	201	0.86
Transmembrane Helix	202	223	0.92
Non-Cytoplasmic	224	230	0.91
Transmembrane Helix	231	252	0.94
Cytoplasmic	253	323	0.98
Transmembrane Helix	324	345	0.88
Non-Cytoplasmic	346	354	0.80
Transmembrane Helix	355	377	0.91
Cytoplasmic	378	384	0.91
Transmembrane Helix	385	404	0.96
Non-Cytoplasmic	405	415	0.72
Transmembrane Helix	416	436	0.77
Cytoplasmic	437	449	0.74
Transmembrane Helix	450	470	0.84
Non-Cytoplasmic	471	474	0.75
Transmembrane Helix	475	496	0.90
Cytoplasmic	497	527	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPTQPLLT DSNSSSPRSL DDTIESYIGS FGWAQFLQAA LVSFSGVFDA QQTFISVFTD  60
   61 SEPTWHCTDS NSICHESISN ICILPKTAWS WDYSPHVSVI SEWGLQCAGS FVKGLPESSF 120
  121 FVGCLIGGLV LSTLADSSLG RKNMLFLSCL VMAISTMLTV FSPNIWVYAV LRFVNGFGRA 180
  181 TIGTCALVLS TELVGKKWRG RVGIMSFFGF MLGFLSLPLM AYMNRGSSWR ILYAWTSIPT 240
  241 IIYCVLVRFF VCESPRWLFV RGRREEAISI LKRVASIPST DVSSGGAISM SFSSLPFEED 300
  301 EEKPSTNVNI FTTMKVLVEK RWALKRLSAV MAIAFGIGLV YYGMPLALSN LDFNIYLSAA 360
  361 FNALMDLPAN LITLFLVDKL SRRNALIGFT ALGGVSSVLI FALHNMRIGN HGALQLALEL 420
  421 ISYFSACSAF NMEMIYTIEL FPTCVRNSAI AMARQALVLG GVFSPIMVAA GRKNAFWSFG 480
  481 LFGLAIGLLG LFAVGLPETR GSDLCDTMDE EECKDRRSKV AVNNVIA