YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15238256, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRAAMLVN VGTVIMTVLT LASLVGGFGV NWGNIASHPL NPNIVVQMLK DNKINKVKLF  60
   61 DADSWTMNAL AGTGMEVMVG IPNNLLESLA DDYDNAKDWV KENVTQYIRK GGVDIKYVAV 120
  121 GNEPFLSAYN GSFLKTTFPA LKNIHKALKE AGHTNIMKAT IPQNAEVYQS ANDKPSEGDF 180
  181 RKDVKQTMLD IVNFFHENDL PFTVNIYPFL SLYLNEHFPV EFAFLDGDGQ TMTDKGKNYD 240
  241 NVFDANYDTL VYALKKAGIH DMKIIVGEVG WPTDGHKYAS PKLAEKFYAG LMKRLAKDGG 300
  301 TPTRPERLEV YLFGFLDEDM KSILPGPFER HWGIFRYDGT PKFMLDFTGQ GRQMVPVAAK 360
  361 GVQYLEKQWC VVNKDTVNLD EVGPDLDYAC YHGDCTAMEA GSTCSKLTKV QNISYAFNMY 420
  421 FQIQDQDVRA CDFKGAAMIT KVNASVGSCL FPVQIVSGSD DFRINFVFGR FVVFGLVLLG 480
  481 LLTVI

Type	Start	End	Confidence
Cytoplasmic	1	7	0.66
Transmembrane Helix	8	30	0.67
Non-Cytoplasmic	31	465	0.91
Transmembrane Helix	466	484	0.68
Cytoplasmic	485	485	0.63