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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|9759536
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.76
Topology Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRFGAGNRS VSKLVLTICV AILFIPSLSY GASQGNRKTA KSSVFSLFNL RDKSRFWSES  60
   61 VFRTDFDDLE SSVHSNSGVL NYTKSGNIAS YLELMEVDSV YLPVPVNFIF IGFEGKGNQD 120
  121 FKLRPEELER WFNKLDHMFE HTRVPQIKEV LNPFYKINIE KEVQHHLPII SRVNYNFSVH 180
  181 AIQMGEKVTS VIEHAIKVLA RKDDVATNKD EESALLQVDA EMMEFIFTSL VEYFHLEDAY 240
  241 NLFILNPKHD NKKAKYGYRY RMENNNDMSP LIMYIPVFLY ETCCEYVVAF DMVRKPLYDR 300
  301 HPMLKFSWTN AEETDTAEWF NACQDALNKL EQLSLGKDAA ELIQSKVLQV FLEKDLRAGD 360
  361 FSNLNAECLT DIWIGKGRWA FIDLTAGPFS WGPSVGGEGV RTELSLPNVG TTIGAVAEIS 420
  421 EDEAEDKLQT AIQDKFSVFG ENDHQAVDIL LAEIDVYELF AFKHCKGRKV KLALCEELDE 480
  481 RMRDLKTELQ SFDGEEYDET HKRKAMDALR RMESWNLFSD EREEFQNYTV ARDTFLAHLG 540
  541 ATLWGSMRHI ISPSVADGAF HHYEKISFQL VFITQEKVRQ IKQLPVDLKA LMDGLSSLLL 600
  601 PSQKPLFSQH MLTLSEDPAL AMAFSVARRA AAVPLLLVNG TYRKTVRSYL DSSILQYQLQ 660
  661 RVNDHTSLKG GHAHSRSTLE IPIFWLISGD PLLIDKHYQA KALSNMVVVV QSEASSWESH 720
  721 LQCNGRSLLW DLRSPVKAAM ASVAEHLAGL LPLHLVYSVA HESAIEDWTW SVGCNPFSVT 780
  781 SQGWLLSQFQ SDTIARSYMI TALEESIQAV NSGIHLLRLE RTNKKTFKLF QSRERELMNK 840
  841 YKYVVSLWRR LSNVAGETRY GDAMRFLHTL EEATSSFVRE VNATVGVLHP IHCTKERKVK 900
  901 VEVDMTTIPA FIIVLILLYA VLRPRAPKPK IN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle