YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NRT21_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	64	0.88
Transmembrane Helix	65	86	0.91
Non-Cytoplasmic	87	124	0.57
Transmembrane Helix	125	148	0.78
Cytoplasmic	149	153	0.51
Transmembrane Helix	154	176	0.85
Non-Cytoplasmic	177	183	0.56
Transmembrane Helix	184	210	0.73
Cytoplasmic	211	220	0.58
Transmembrane Helix	221	243	0.86
Non-Cytoplasmic	244	311	0.61
Transmembrane Helix	312	331	0.92
Cytoplasmic	332	351	0.67
Transmembrane Helix	352	372	0.92
Non-Cytoplasmic	373	377	0.64
Transmembrane Helix	378	400	0.92
Cytoplasmic	401	407	0.61
Transmembrane Helix	408	431	0.88
Non-Cytoplasmic	432	440	0.66
Transmembrane Helix	441	461	0.93
Cytoplasmic	462	530	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDSTGEPGS SMHGVTGREQ SFAFSVQSPI VHTDKTAKFD LPVDTEHKAT VFKLFSFAKP  60
   61 HMRTFHLSWI SFSTCFVSTF AAAPLVPIIR ENLNLTKQDI GNAGVASVSG SIFSRLVMGA 120
  121 VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN 180
  181 SQIIGLVNGT AAGWGNMGGG ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI 240
  241 LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN 300
  301 VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT 360
  361 AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV PFVSRRALGI ISGLTGAGGN 420
  421 FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE 480
  481 AHYYGSEWNE QEKQKNMHQG SLRFAENAKS EGGRRVRSAA TPPENTPNNV