YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	THIK5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERAMERQKI LLRHLNPVSS SNSSLKHEPS LLSPVNCVSE VSPMAAFGDD IVIVAAYRTA  60
   61 ICKARRGGFK DTLPDDLLAS VLKAVVERTS LDPSEVGDIV VGTVIAPGSQ RAMECRVAAY 120
  121 FAGFPDSVPV RTVNRQCSSG LQAVADVAAS IRAGYYDIGI GAGVESMSTD HIPGGGFHGS 180
  181 NPRAQDFPKA RDCLLPMGIT SENVAERFGV TREEQDMAAV ESHKRAAAAI ASGKLKDEII 240
  241 PVATKIVDPE TKAEKAIVVS VDDGVRPNSN MADLAKLKTV FKQNGSTTAG NASQISDGAG 300
  301 AVLLMKRSLA MKKGLPILGV FRSFAVTGVE PSVMGIGPAV AIPAATKLAG LNVSDIDLFE 360
  361 INEAFASQYV YSCKKLELDM EKVNVNGGAI AIGHPLGATG ARCVATLLHE MKRRGKDCRF 420
  421 GVISMCIGTG MGAAAVFERG DSVDNLSNAR VANGDSH

Type	Start	End	Confidence
Non-Cytoplasmic	1	389	0.53
Transmembrane Helix	390	406	0.46
Cytoplasmic	407	417	0.58
Transmembrane Helix	418	437	0.62
Non-Cytoplasmic	438	457	0.93