YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Y5370_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.97
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGLCLNSFT RVLLLLFVFL VFSHKWQRVN AVEPVLELVK GFEAKPDSSI DSFQPLLTDS  60
   61 NGNFSFGFLR VNGSRLSLAV THPNLTDPLW VLDPTRSASW SHKTKLFFNG SLVIIDPSSR 120
  121 LEWSTHTNGD RLILRNDSNL QVVKTSTFVE WESFDFPGNT LVESQNFTSA MALVSPNGLY 180
  181 SMRLGSDFIG LYAKVSEESQ QFYWKHSALQ AKAKVKDGAG PILARINPNG YLGMYQTGSI 240
  241 PIDVEAFNSF QRPVNGLLIL RLESDGNLRG YLWDGSHWAL NYEAIRETCD LPNPCGPYSL 300
  301 CTPGSGCSCI DNRTVIGECT HAASSPADFC DKTTEFKVVR RDGVEVPFKE LMDHKTTSSL 360
  361 GECEEMCVDN CKCFGAVYNN GSGFCYLVNY PIRTMLGVAD PSKLGYFKVR EGVGKKKSRV 420
  421 GLTVGMSLLA VIALVLMVAM VYVGFRNWRR EKRVLEEDNG LSPGPYKNLG SDSFNSVEMS 480
  481 RR

Type	Start	End	Confidence
Signal Peptide	1	31	0.90
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	423	0.99
Transmembrane Helix	424	445	0.93
Cytoplasmic	446	482	0.98