YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TET2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALANNLTAI LNLLALLCSI PITASGIWLA SKPDNECVNL LRWPVVVLGV LILVVSATGF  60
   61 IGAYKYKETL LAVYLCCMAI LIGLLLVVLI FAFVVTRPDG SYRVPGRGYK EYRLEGFSNW 120
  121 LKENVVDSKN WGRLRACLAD TNVCPKLNQE FITADQFFSS SKITPLQSGC CKPPTACGYN 180
  181 FVNPTLWLNP TNMAADADCY LWSNDQSQLC YNCNSCKAGL LGNLRKEWRK ANLILIITVV 240
  241 VLIWVYVIAC SAFRNAQTED LFRKYKQGWV

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.88
Transmembrane Helix	8	30	0.93
Cytoplasmic	31	39	0.87
Transmembrane Helix	40	63	0.91
Non-Cytoplasmic	64	70	0.80
Transmembrane Helix	71	95	0.94
Cytoplasmic	96	230	0.93
Transmembrane Helix	231	253	0.89
Non-Cytoplasmic	254	270	0.90