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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|12323178, gi|...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.36
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKSIGELSC DDYVKAGLTL EDAKEFDKLV SDVITKAIET DPRDQWKALV DESVLKPWHP  60
   61 HPLHQLLYYS VYSNWDSSVH GPPLYWFPSL SQSKSTNLGK LMEYHGPRLL GPSYKNPLES 120
  121 FELFRRFSVE HPEVYWSFVI DELSLVFHTP PRCILNKSKP EGTWLPDAVL NIAECCLMPS 180
  181 SHPKKEDDSV AVVWRNEGFD DSPVNRMTIK ELREQVMLVA NAISGSFEKG DTIAIDMPMT 240
  241 VDAVIIYLAI ILAGCIVVSI ADSFAAKEIA TRLKISKAKG IFTQDYILRG GRRFPLYSRV 300
  301 VEAAPSKVIV LPASGTELHV QLREQDVSWM DFLSNAKPHS SGENYYRPIY LPVESVINIL 360
  361 FSSGTTGEPK AIPWTQLSPI RSACDGWAHL DVQVGHTYCW PTNLGWVMGP TLMFSCFLTG 420
  421 ATLALYSGSP LGRGFGKFDA GVTVLGTVPS LVKTWKRTNC MEGLNWTKIK FFATTGEASN 480
  481 VDDVLWLSSK ADYKPVIECC GGTELASSYI IGSPLQPQAF GAFSTPSMTT RIIIFDENGV 540
  541 PYPDDQPCTG EVGLFPQHLG ATDRLLNANH DEVYFKGMPM YKETRLRRHG DIVKRTVGGY 600
  601 YNVQGRADDT MNLGGIKTSS IEIERVCDQA DECISETAAV TLTPPNGGPE LLVIFAVLKE 660
  661 GFKQQSGEEL KMKFSRTIQK DLNPLFKVSF VKIVPEFPRT ASSKLLRRGG LHNVSWFQFL 720
  721 PSETELNPGF DRSSRAEQNE VATYLVLSSH LRLQKEGFLT TWTNSFVGPW DPSQGLYNPD 780
  781 EKIKLWLFLP GRHSSISDKA QAAVSKLRVN MPVVYGYLGI LVLTFLFLLL KVVASGIWVA 840
  841 PGDSEEISVA FSQSLRNCIE RALSGISYMR FGDVFSKFSP QSEEYLRGQP TVEFIFAATE 900
  901 EAVFVHVIIS AKNVRTLSSG DAERMLRSSL KNSSYRLPAF RKCLGLAKSE DNRLCYINTS 960
  961 HRPMLFPPVI VSPHGMRGSL TGFCPNDLVK QVYFSSGNLK TSTGYVGLPS HIGRGSRLIN1020
 1021 GNHCYVEVTL GCCQNRNDNT SQANSTFAVN LPHNQCPEPS VGSKDHRKGQ SDLSSVCEKK1080
 1081 FIYPAEAVLV PILQSAFAKF SLKRAGDFDC LGASENKSDG FYEKNGYNSS GSSRNSSISS1140
 1141 TSSASSGSGW RMTSRTGDLD ADADSLTCRQ SGLTCNDDRL KMGSKRPRTG MAESFGQVGI1200
 1201 ENDQIGWDWD ADDDDDDREV GMDIKALLSE FGDFGDFFEN DALPFGEPPG TAESHVLVFP1260
 1261 PDSADVGSSP VDMMDVSDQI VLPVGFSSFE SFNPVPPIID ECLIKSQEVL HSSITSVPSN1320
 1321 QMSISSTGEF DHLLKAEAMM TFAPEYGAVE APMSEISSTF FKSPYLPKSH KVESSNSRTS1380
 1381 NYVYGATPPT TDSDGAGDMI LFGSKSCIGN NAGRTLYHSR EHYTQVEGRK GRHDKLPTVI1440
 1441 SDNSSTKEGV SQSIHSKHSA ANAVKVVQGK KTDGISAVVS TLLSSKTLLA TDVGSVMFQA1500
 1501 FMCRMRHIIT SSKHSSPVSL TRLSGNFFLN QLSNEPSTLT DNISARNEIY KKDIPTRIAG1560
 1561 DFDGGMLDSH MSAPVGVWRT VSVPKTAKPA SSPNIEAGSS LPHSSFSEDS LLSYGQRQPL1620
 1621 QDLLDGIALL VQQATSFVDL ALDSDCGDGP YGWLALEELW RRELSCGPSA GHAGCGGTLA1680
 1681 SCHSLDIAGV KLVDPLSAEV FPSSVITLLQ SDIKTALKSA FGQSDGPLSV TDWCKGRNQS1740
 1741 GDGGSISEGF TAESALSEVN GVNISDDFII DKYFGKQAVS NAIDGGKGDE TAQSQDIYSS1800
 1801 ELLRPTLFVL PSPAILVGYQ DDWLKISTNS LTHWEKAPFE PYALPKSINY AVVCPDIDPL1860
 1861 TCAATDFFQQ LGTGESTSLS FVKEVMLKHD RNWLGTHLPQ SLGNQMEKDV GRLSSSGFVL1920
 1921 LDCPQSMKIE SNNTSLLGSL SDYFLSLSNG WNVNSYLKSL SKALKGLKLG SGLYTNQKEG1980
 1981 SGSPCVVVYI VCPFPDPSAV LRTIVESSIA LGSVIQSDRD RRSILNSQVA RAFSSSTAVD2040
 2041 EASISHIPVL SGFSVPKLVL QVVSVDSIFR ITSPSFNELV ILKDTAFSVY NKARRISRGM2100
 2101 PNDAFFSSSL PSRSSSALTP MNSISGIWKD CGGSRMTGST HPRDGEIDVS LRTSGWDTST2160
 2161 SWQIPRSGGL SCDPNRNGDF YLNDEIFYLF EPLFILSEPG SVERGVSPTF TSLGSESSKP2220
 2221 IPEDGGRGSG PGMNSMEGIT SGSSSQGDVS QLEGKAIPSL HCCYGWTEDW RWLVSIWTDA2280
 2281 RVLQQGCQIL QACSSPDNGS FKPRDFVITR IGNFFELEYQ EWQKAIYSAG GPEIKKWPIQ2340
 2341 LRRSAPSGIA TNSNGSSLQQ QDLSLIQERA SSTSTLYSSH SKQSTFVKGS MGQSAGRKQI2400
 2401 MGGQTISGTP RGLFQWVHSI SFASISLDHS LHFVLPAELV SADAHLHGYL HNYVGGGQSS2460
 2461 TGMSSVNYIE GFTPVKSLGS TAFSYMMIPS PNMRFLHPSP LQLPTCLTAE SPPLAHLLHS2520
 2521 KGYAIPLSTG FVVSKAVPSM RKDSRINVKE EWPSVLSVSL IDYYGGYDNA HDKILQGIVK2580
 2581 QGGGTKETRD FEVESHLILE SIAAELHALS WMTVSPAYLD RRTALPFHCD MVLRLRRLLH2640
 2641 FADKEVSRIP DKTGV

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