YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	XYLL3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	94	0.99
Transmembrane Helix	95	118	0.82
Non-Cytoplasmic	119	141	0.88
Transmembrane Helix	142	165	0.89
Cytoplasmic	166	174	0.86
Transmembrane Helix	175	195	0.91
Non-Cytoplasmic	196	202	0.65
Transmembrane Helix	203	221	0.94
Cytoplasmic	222	237	0.74
Transmembrane Helix	238	255	0.94
Non-Cytoplasmic	256	262	0.76
Transmembrane Helix	263	284	0.86
Cytoplasmic	285	358	0.95
Transmembrane Helix	359	374	0.74
Non-Cytoplasmic	375	394	0.55
Transmembrane Helix	395	416	0.74
Cytoplasmic	417	426	0.83
Transmembrane Helix	427	446	0.95
Non-Cytoplasmic	447	453	0.72
Transmembrane Helix	454	477	0.85
Cytoplasmic	478	490	0.84
Transmembrane Helix	491	511	0.93
Non-Cytoplasmic	512	521	0.77
Transmembrane Helix	522	541	0.96
Cytoplasmic	542	558	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFAVSVQSH FAIRALKRDH FKNPSPRTFC SCFKSRPDSS YLSLKERTCF VSKPGLVTTR  60
   61 YRHIFQVGAE TGGEFADSGE VADSLASDAP ESFSWSSVIL PFIFPALGGL LFGYDIGATS 120
  121 GATLSLQSPA LSGTTWFNFS PVQLGLVVSG SLYGALLGSI SVYGVADFLG RRRELIIAAV 180
  181 LYLLGSLITG CAPDLNILLV GRLLYGFGIG LAMHGAPLYI AETCPSQIRG TLISLKELFI 240
  241 VLGILLGFSV GSFQIDVVGG WRYMYGFGTP VALLMGLGMW SLPASPRWLL LRAVQGKGQL 300
  301 QEYKEKAMLA LSKLRGRPPG DKISEKLVDD AYLSVKTAYE DEKSGGNFLE VFQGPNLKAL 360
  361 TIGGGLVLFQ QITGQPSVLY YAGSILQTAG FSAAADATRV SVIIGVFKLL MTWVAVAKVD 420
  421 DLGRRPLLIG GVSGIALSLF LLSAYYKFLG GFPLVAVGAL LLYVGCYQIS FGPISWLMVS 480
  481 EIFPLRTRGR GISLAVLTNF GSNAIVTFAF SPLKEFLGAE NLFLLFGGIA LVSLLFVILV 540
  541 VPETKGLSLE EIESKILK