YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7267243, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	101	0.83
Transmembrane Helix	102	126	0.72
Non-Cytoplasmic	127	133	0.73
Transmembrane Helix	134	153	0.79
Cytoplasmic	154	161	0.74
Transmembrane Helix	162	181	0.93
Non-Cytoplasmic	182	212	0.91
Transmembrane Helix	213	233	0.93
Cytoplasmic	234	241	0.94
Transmembrane Helix	242	267	0.84
Non-Cytoplasmic	268	284	0.93
Transmembrane Helix	285	303	0.92
Cytoplasmic	304	317	0.80
Transmembrane Helix	318	339	0.86
Non-Cytoplasmic	340	342	0.69
Transmembrane Helix	343	359	0.52
Cytoplasmic	360	367	0.48
Transmembrane Helix	368	389	0.75
Non-Cytoplasmic	390	395	0.57
Transmembrane Helix	396	420	0.82
Cytoplasmic	421	427	0.58
Transmembrane Helix	428	449	0.78
Non-Cytoplasmic	450	458	0.54
Transmembrane Helix	459	477	0.70
Cytoplasmic	478	756	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKQHSVRLK HCVFTVKSSV PVYSEGVNDG IKLHSFGNLV KKKVFLDTSK RFYFQGRWSE  60
   61 SSGRRVETYA GVDVASAVDV INDLGFDTLT FLMVTVIIVP AFRILKASPI LGFFFAGVVL 120
  121 NQFGLIRNLT DVKVLSEWGI LFLLFEMGLE LSLARLKALA KFAFGMGLTQ VLLCTAAFTA 180
  181 FELPPNGAIG TKILEFLFHS RPDLVNIRSI DEAVVIGAAL SLSSSAFVLQ LLAEKGELPT 240
  241 RFGSATLGIL LLQDIAVVPL LVILPVLESQ DIGGESIWPM LAKESAKALG GLGILSLGGK 300
  301 FFLRRIFEVV AETRSSEAFV ALCLLTVAGT SLVTQWLGFS DTLGAFLAGA LLAETNFRTQ 360
  361 IEADIRPFRG LLLGLFFVTT GTSIDMEVLF REWPNVLSLL GGLIVIKTLI ITAIGPRVGL 420
  421 TIQESVRVGF LLSQGGEFAF VVFSLANRLG VLPNELNKLL IIVVVLSMAL TPYLNQLGRK 480
  481 AADFLDERLD PGEKIGEDVN FDVSESIVII GFGQMGQVLA NFLSTPLVSD SDLVGWPYIG 540
  541 FDLNPAVVKE SRKLGFPILY GDGSRPSVLQ SAGVSSPKAI MIMYKGKKRT TEAVQRLRLA 600
  601 FPGSPIYARA QDLPHLLELK KAGATDAILE NAETSLQLGS KLLTGFGVMS DDVSFLSKVF 660
  661 RDSMEIQAQE EITASETNAG LKPMQMKASD INVVSAATQK QVQLMKPMQM KASDSNSDSA 720
  721 AEILQETAGL SQPPEIDDSS VNIDNGFVGK ADKAQD