YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRPM2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRMDYLAMK TDDVDTVALV NSDMEELKVA AKKLFSDVSK LGGLGFGVSF LKFLASFAAI  60
   61 YLLILDRTNW KTKMLTSLLI PYIFLSLPSV IFNFLSGDVG KWIAFVAVVL RLFFPKHFPD 120
  121 WLEMPGSLIL LLVVSPHFLA HHIRGTWIGT VISLFIGCYL LQEHIRASGG FRNSFTQPRG 180
  181 VSNTLGIILL LVYPVWALIV RVM

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.50
Transmembrane Helix	42	65	0.88
Cytoplasmic	66	73	0.48
Transmembrane Helix	74	97	0.78
Non-Cytoplasmic	98	98	0.38
Transmembrane Helix	99	114	0.41
Cytoplasmic	115	120	0.33
Transmembrane Helix	121	140	0.62
Non-Cytoplasmic	141	142	0.42
Transmembrane Helix	143	161	0.85
Cytoplasmic	162	179	0.64
Transmembrane Helix	180	200	0.92
Non-Cytoplasmic	201	203	0.65