YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25404161, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAILSRPVNQ VFINFRGKDI RHGFVSHLKD ALKRKNINFF IDTHEQKGRD LNHLFKRIEE  60
   61 ATIALVILSP RYGESKWCLE ELTTIMDQEE KGQMIVIPIF YKVRTEDVEK QTGEFGHMFW 120
  121 SCDEEASLEE MEKWQVALKA VCNKIGLTLD LKRSEAKFIK KVLKAVEEVL TTIQSDEAKE 180
  181 GNCVEDVETF NVPLTLPWSW FSSAVELIGA ILGLLAETVH ADEGRREADF VKKVKTLNVP 240
  241 LALPWLWFGS AVELIGAVVG LLIKAVQSDE RKEDGCVKKV KTFNIALALP WLWFGSAVEL 300
  301 IGSVLGIINT VRSGEGREDD CVKKVKTFYV PLALPWLWFG SAVELVGAVL GLLNEIVHKC 360
  361 ASPTMVILAS QVGSVVAISS RWADKSV

Type	Start	End	Confidence
Non-Cytoplasmic	1	197	0.55
Transmembrane Helix	198	220	0.64
Cytoplasmic	221	240	0.44
Transmembrane Helix	241	263	0.82
Non-Cytoplasmic	264	286	0.48
Transmembrane Helix	287	311	0.78
Cytoplasmic	312	331	0.43
Transmembrane Helix	332	353	0.85
Non-Cytoplasmic	354	359	0.43
Transmembrane Helix	360	382	0.65
Cytoplasmic	383	387	0.61