YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7488110, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISSIKPVLP SLTAIVGIGI YFAIWWALNG VFNNYNKKVL NAFPYLWLTL TLSLACGSLM  60
   61 MLVSWVALAH TIGHVEAIVR CALAAVMELN FNMIGFMGAM ISNLAFVFRN IFSKKGMKGK 120
  121 SVSVMNYYAC LSMMSLLIVT PFANSVEGPQ MWADGWQNDV SKSDQTLSSK WVVAHSVFYH 180
  181 LYNQVSYIPR CLNHHLPNPL KHVNALGAAI AILGTFIYSQ IKNRVKKNHI LLVLCLGMLE 240
  241 PLVITL

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.85
Transmembrane Helix	8	29	0.88
Cytoplasmic	30	44	0.73
Transmembrane Helix	45	68	0.90
Non-Cytoplasmic	69	92	0.77
Transmembrane Helix	93	112	0.90
Cytoplasmic	113	123	0.91
Transmembrane Helix	124	143	0.95
Non-Cytoplasmic	144	201	0.94
Transmembrane Helix	202	221	0.90
Cytoplasmic	222	228	0.86
Transmembrane Helix	229	244	0.55
Non-Cytoplasmic	245	246	0.44