YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8778412, gi\|4...
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIFSTSHLL FISFIIATCT ISVSGTTFTL TNHCGSTIWP GILTANGAQL GDGGFALASG  60
   61 SSVTFTVSPG WSGRFWARTY CNFDASGSGK CGTGDCGSKL KCAGAGGAPP ATLAEFTIGS 120
  121 SGKKNAVQDF YDVSLVDGYN VQMKITPQGG SGDCKTAGCV SDVNAICPKE LQVTGPSGVA 180
  181 ACKSACEAFN KPEYCCTGAY STPATCPPTN YSKIFKQACP SAYSYAYDDA SSTFTCTNAN 240
  241 YEISFCS

Type	Start	End	Confidence
Cytoplasmic	1	8	0.59
Transmembrane Helix	9	30	0.63
Non-Cytoplasmic	31	52	0.85
Transmembrane Helix	53	71	0.55
Cytoplasmic	72	247	0.60