YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|48310149, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQLLFLVLF VEGAIAFLLL VKIGPLRELV MKSLDQLKLG KRPATLKTIA GTMSVILLSN  60
   61 LMNIIKIQNK GAKLGTMSPM DQVLWRTHLL EASLMGVVLF FGFIIDRTHH YLEKLITLRS 120
  121 NVGSSKGELE ELRKERIELK EKEEKTSKEI KQLKEKLSCV SENLKKLEKE SKEKETKLET 180
  181 AEAHVTALQK QSSELLLEYD RLLEDNQNLQ SQILVGTKKT

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.84
Transmembrane Helix	5	26	0.86
Cytoplasmic	27	43	0.88
Transmembrane Helix	44	65	0.87
Non-Cytoplasmic	66	83	0.88
Transmembrane Helix	84	105	0.86
Cytoplasmic	106	220	0.89