YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SUC3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.99
Transmembrane Helix	58	79	0.89
Non-Cytoplasmic	80	95	0.79
Transmembrane Helix	96	119	0.85
Cytoplasmic	120	132	0.92
Transmembrane Helix	133	154	0.92
Non-Cytoplasmic	155	172	0.90
Transmembrane Helix	173	193	0.87
Cytoplasmic	194	212	0.89
Transmembrane Helix	213	234	0.92
Non-Cytoplasmic	235	257	0.87
Transmembrane Helix	258	278	0.93
Cytoplasmic	279	364	0.97
Transmembrane Helix	365	386	0.88
Non-Cytoplasmic	387	416	0.94
Transmembrane Helix	417	435	0.94
Cytoplasmic	436	445	0.82
Transmembrane Helix	446	468	0.91
Non-Cytoplasmic	469	488	0.89
Transmembrane Helix	489	510	0.92
Cytoplasmic	511	521	0.80
Transmembrane Helix	522	542	0.88
Non-Cytoplasmic	543	557	0.70
Transmembrane Helix	558	577	0.93
Cytoplasmic	578	594	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSVSISVP YRNLRKEIEL ETVTKHRQNE SGSSSFSESA SPSNHSDSAD GESVSKNCSL  60
   61 VTLVLSCTVA AGVQFGWALQ LSLLTPYIQT LGISHAFSSF IWLCGPITGL VVQPFVGIWS 120
  121 DKCTSKYGRR RPFILVGSFM ISIAVIIIGF SADIGYLLGD SKEHCSTFKG TRTRAAVVFI 180
  181 IGFWLLDLAN NTVQGPARAL LADLSGPDQR NTANAVFCLW MAIGNILGFS AGASGKWQEW 240
  241 FPFLTSRACC AACGNLKAAF LLAVVFLTIC TLVTIYFAKE IPFTSNKPTR IQDSAPLLDD 300
  301 LQSKGLEHSK LNNGTANGIK YERVERDTDE QFGNSENEHQ DETYVDGPGS VLVNLLTSLR 360
  361 HLPPAMHSVL IVMALTWLSW FPFFLFDTDW MGREVYHGDP TGDSLHMELY DQGVREGALG 420
  421 LLLNSVVLGI SSFLIEPMCQ RMGARVVWAL SNFTVFACMA GTAVISLMSL SDDKNGIEYI 480
  481 MRGNETTRTA AVIVFALLGF PLAITYSVPF SVTAEVTADS GGGQGLAIGV LNLAIVIPQM 540
  541 IVSLGAGPWD QLFGGGNLPA FVLASVAAFA AGVIALQRLP TLSSSFKSTG FHIG